NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316604_10252867

Scaffold Ga0316604_10252867


Overview

Basic Information
Taxon OID3300033406 Open in IMG/M
Scaffold IDGa0316604_10252867 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)957
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Soil Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3777Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011594Metagenome289Y
F019156Metagenome / Metatranscriptome231Y
F037274Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0316604_102528671F019156N/AERYKIGEAKFFLSRMEESLGNREAFRYYMSAFLAAAQSVTQYAREESKSKGGEQWYDKTIAGNVVLSYTSQTAIRHRFADWPGAEDQIGSSQRHSEDLIGLSQRYIEELEKFVQRGMEEGILSG
Ga0316604_102528672F037274GGAMKIYAVYRLGYWNNKLELLGKVVERRKEERNNNAADMLRWAQKIYAASSIDSSIFIVKEGSSEGPIFGGA
Ga0316604_102528673F011594N/AYAEFENLILLSDRMISSCVPRKSEYWRGYNSGIKFHFQNGRQESLPDHYFIVEIARREGSRDVHAYACGYRDGCNGLIPEDIP
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