NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316605_10036062

Scaffold Ga0316605_10036062


Overview

Basic Information
Taxon OID3300033408 Open in IMG/M
Scaffold IDGa0316605_10036062 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3360
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Soil Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3777Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011594Metagenome289Y
F019156Metagenome / Metatranscriptome231Y
F037274Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0316605_100360622F019156GAGGMNERYKIGEAKFFLSRMEESLGNREAFRYYMSAFLAAAQSVTQYAREESKSKGGEQWYDKTIAGNVVLSYTSQTAIRHRFADWPGAEDQIGSSQRHSEDLIGLSQRYIEELEKFVQRGMEEGILSG
Ga0316605_100360623F037274GGAVILFCINGNRDGVNMKIYAVYRLGYWNNKLELLGKVVERRKEERNNNAADMLRWAQKIYAASSIDSSIFIVKEGSSEGPIFGGA
Ga0316605_100360624F011594GGGGGMTYAEFENFILLSDRMISSCVPRKSEYWRGYNSGIKFHFQNGRQESLPDHYFIVEIARREGSRDVHAYACGYRDGCNGLIPEDIP
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