NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310810_11299807

Scaffold Ga0310810_11299807


Overview

Basic Information
Taxon OID3300033412 Open in IMG/M
Scaffold IDGa0310810_11299807 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018030Metagenome / Metatranscriptome237N
F020741Metagenome / Metatranscriptome222N

Sequences

Protein IDFamilyRBSSequence
Ga0310810_112998071F018030N/AAATSLDDTVRKAQDILWDALPPGAVRGSAVLKLRDLLWSPEVGAALAISPDNYLAFALRESRLALVDTSAWPDKTLSALWTILDDPALNAALGIPQDTTLNAPRRNYPWR
Ga0310810_112998072F020741N/AAQVGAFSQSPGGEARAKARGDGAQVECGPIGCRPLPPGCRQVRLGGRWLDNNGLQVVCDRKRN

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