NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316619_11534939

Scaffold Ga0316619_11534939


Overview

Basic Information
Taxon OID3300033414 Open in IMG/M
Scaffold IDGa0316619_11534939 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002989Metagenome / Metatranscriptome515Y
F062881Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0316619_115349391F062881N/AVPSCLGTYMTTTTTTDLLHQIAQIQLMERGKLSPYAIKDRALPASPYYKLQAWENGKNVTRYIRAEQVPLVEEALANYAKFQDLVGQYAQGVIDQTREQLAAVGVKKKPGRRPTSCWRRSRKSSN
Ga0316619_115349392F002989AGGAMTRFQTQVPTGSLVQELELLVRTAIFKPANALVGHLLQAAADRIDAAYQPRPGQVYKGREVCQVQGLFGCFPL

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