Scaffold Ga0316622_100140002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316622_100140002

Scaffold Ga0316622_100140002

Overview

Basic Information
Taxon OID	3300033416 Open in IMG/M
Scaffold ID	Ga0316622_100140002 Open in IMG/M
Source Dataset Name	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2505
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	41.3778	Long. (^o)	-82.5111	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054142	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316622_1001400022	F054142	GGAGG	MSATAGPRRGRRRRPFGAAALMLAAIGCSGTPVSPTGALSGQFGLIPGEYTLVVYVPRGEAGKHVICVDDNSVPDSVSIPVTLVLADDIYRVTPVGDANIRFQLLLQMSGPTTVYGPVLGQARDPSTGVVVTISPPVDPYYPTQGDATLSGLMASRNFVAGMVYGSVQFSLDGAARWCTPNNWILKPR

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