Scaffold Ga0316193_10052384

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316193_10052384

Scaffold Ga0316193_10052384

Overview

Basic Information
Taxon OID	3300033429 Open in IMG/M
Scaffold ID	Ga0316193_10052384 Open in IMG/M
Source Dataset Name	Coastal sediment microbial communities from Maine, United States - Merrow Island sediment 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3175
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Maine
Coordinates	Lat. (^o)	43.8826	Long. (^o)	-69.6616	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070131	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316193_100523841	F070131	GGAGG	MIGKMLTKTGIIGVLVCCFLLQVNLAGGDNRIYQQIIKKSNVPMEIELHFSSTPMLNEYTVLNIEIRVLKDAPNTLIEIEIPNDGFEIISGNTQFNEDLSSGSTTLYQLEVLPIALGQHKIAASAVSGETDYIFGKREELYVNIGEEYSELSKSSFIPEITDNRSKATKIGNFSEPSAEVQSDQKPEEGQEILYFA

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