NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326761_1004097

Scaffold Ga0326761_1004097


Overview

Basic Information
Taxon OID3300033431 Open in IMG/M
Scaffold IDGa0326761_1004097 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.EP_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3182
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6904Long. (o)-110.7291Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013155Metagenome / Metatranscriptome274Y
F075483Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0326761_10040972F013155AGGMELYQVVVIAIALANLAVTIWLLRLLIPIWQTLRRIVFALEHFDFDEISRKFLNNEKPLAESVIVKTSEKKEEGYREISITRVYKKPLDAKEVWEGIVRQMAEKLQ
Ga0326761_10040973F075483GGAGMIELLLVQAITNLALAFFVIKLRRELWPMFAVAKSGEVGFWVRSADVLGVVMPQFEASKVVIKVRWLFSEEIHMTYSLRVYDVAMHPYRRHHYVRWKAWLNGDDRYRCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKRWTKPEPSRSAPP
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