Scaffold Ga0326726_10000044

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326726_10000044

Scaffold Ga0326726_10000044

Overview

Basic Information
Taxon OID	3300033433 Open in IMG/M
Scaffold ID	Ga0326726_10000044 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	107291
Total Scaffold Genes	89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	77 (86.52%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.3286	Long. (^o)	-76.4792	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000275	Metagenome / Metatranscriptome	1391	Y
F016469	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326726_1000004447	F000275	GGAG	MTAKTELSAPKRRTRAEIQQLVAEFVSSGMRRSEFCQSRGLSFSTLDRHLKKRRWKRRRKPVSSTGRLVKVELAAKKWPTQHEPSCGLAVVLPGGCRIEVHPDFDTSTFERVVGILERA
Ga0326726_1000004486	F016469	N/A	MPVSAAARKDYNEGVRYYTTKSMNGGTTFKCALCEHTVTTLDFNSLEGNRRTQAATAMNRHAAVLHFPARTVVPAKLGGRGAL

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