NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310690_10052369

Scaffold Ga0310690_10052369


Overview

Basic Information
Taxon OID3300033463 Open in IMG/M
Scaffold IDGa0310690_10052369 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4716
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048027Metagenome / Metatranscriptome148Y
F082826Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0310690_100523693F082826N/AMKKYTIQLNYNASIIEEVHADDEGEALDKARDLAEDADIRQFTIGSERESKIFSVC
Ga0310690_100523694F048027N/AMSKKVVSEVKNSLEMRIRAIGESGKAKGMPSSFNLPKNKENRELHIDICKKLVELSNAYGNYPITYLVYFAVGKNAHRIHVFLDGYKKFDEKKAKTIFSWLKLFAKHNGNAKLFRNPNLAHALCRFYDKYSTKTKDFKAALEKYEPNPKVSNFTMVAEGLGIAKQANEVAEAEAAMEPAVVNA
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