NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310690_10809192

Scaffold Ga0310690_10809192


Overview

Basic Information
Taxon OID3300033463 Open in IMG/M
Scaffold IDGa0310690_10809192 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1051
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015685Metagenome / Metatranscriptome252Y
F023770Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0310690_108091922F015685GAGMAKIKLHGMFARVMGKFNRSETLYFKRGPCGEEQLGVDLLNPSKATHTKNVQCQNALKTAAQAAKTALADPSERATLEAGFQAQHKYRTLFAYTVAQKYVKPSFS
Ga0310690_108091923F023770N/AMAKVEFDPGIASVRGILMGTDPFYIRRYPQRGGGVMHIVQARPDRSGHIPTAAESTARITFAEKYGRQRHLDFLERKYRGQLFLPLEGFTPPVNQLTSRPVDP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.