NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310690_11342705

Scaffold Ga0310690_11342705


Overview

Basic Information
Taxon OID3300033463 Open in IMG/M
Scaffold IDGa0310690_11342705 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)782
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062785Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0310690_113427051F062785N/ALQGQHALFVSLSLKNGKGDDNGTAPGAHGQQSTLGAQFGFSQTNSHFGLGQLGLWHFQSQFGSSQTGSHSGFGAWQXVTQXGCLHTVTHLGQSNPSHPLSGHLISHSGFSHLTSHIAFLGSAQDVWHFGGSHTGSHIAGQCGSSHFHEHCGXH
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