NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315915_1074804

Scaffold Ga0315915_1074804


Overview

Basic Information
Taxon OID3300033464 Open in IMG/M
Scaffold IDGa0315915_1074804 Open in IMG/M
Source Dataset NameMedicago polymorpha root nodule microbial communities from Los Angeles, California, United States - branched nodules
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Nodule → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.06Long. (o)-118.44Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065467Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0315915_10748041F065467N/AQTPSTAITNDQPSSSSSTIQTLQQPPPNMLKSEFWDAELLAITAKVQSLVEHRRSPTLHLTYQELWETLQTRASELLSTLSQKCIKIHKVASMHYATLVHFVEDQDPLPIANTPYFPESEYLTREARLFKQLRQTILKQQEEAKAREDHLLQKQLELEAALKMKEDLIAHLMNQQPKPYKHTNFFIYFASV
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