Scaffold Ga0316627_100212221

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0316627_100212221

Scaffold Ga0316627_100212221

Overview

Basic Information
Taxon OID	3300033482 Open in IMG/M
Scaffold ID	Ga0316627_100212221 Open in IMG/M
Source Dataset Name	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1504
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	41.3769	Long. (^o)	-82.5097	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076221	Metagenome / Metatranscriptome	118	Y
F098319	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316627_1002122211	F098319	N/A	MQSGPMKVFIRKTKTGWYYQEPSKWTPDQGAAYDLGQVARAVERIFEAQLEDVEILLSYDEPRYDLVLPVPPSPSRRDPLRQRPPSEESRQGERDHPAIPRKKGPLL
Ga0316627_1002122212	F076221	N/A	MLPAMNDREAVKVLIVNDDGLYLAGNAIAWEFTDDRRRARVFDYLEDQVAEKIDLIRKVHGRVWIAVKLDPREVYEFCDRCGERMRAFRAYFDGRQFLCVNCRKADSGA

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.