Scaffold Ga0316624_10221793

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316624_10221793

Scaffold Ga0316624_10221793

Overview

Basic Information
Taxon OID	3300033486 Open in IMG/M
Scaffold ID	Ga0316624_10221793 Open in IMG/M
Source Dataset Name	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1479
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	41.3776	Long. (^o)	-82.512	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034644	Metagenome / Metatranscriptome	174	Y
F037314	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316624_102217933	F034644	AGG	MGPRVAQRITMTLLAAALCSVVAGADKLSELQSRFDGEANAVHKAKMLQKLGDAQFEEAGRAKQAGDYPTMDLMMEKYRDNVRAAAQALEKEHPDAERHPNGYKQLEMHVQKGLRELDEFLLEAPEPFKPPLQLVRKDLLKADDMLLGHLFPAHHKKKQESLAPAAGPSGPGAQP
Ga0316624_102217934	F037314	N/A	NQPKLALEAYQKFLELDEGKNADQVWQAQQRSKVLRRMLDQKR

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