NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316624_10525065

Scaffold Ga0316624_10525065


Overview

Basic Information
Taxon OID3300033486 Open in IMG/M
Scaffold IDGa0316624_10525065 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1017
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.512Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049736Metagenome / Metatranscriptome146Y
F052016Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0316624_105250652F052016AGGAGMSDRISVIFSSTNKNFLYNCEIPVSMLPRIGERIRLSIPGHSDIRCYVEDMEWQYAELEKAIGISIVARIKMLQED
Ga0316624_105250653F049736N/AKQRACQLANDPENGKPMETPWRAWLKNAKFAYWLIVGGLAFFAVVIALGMVEILSTQQILLLGQCYLFLLILGMLLQMIARRL

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