NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326762_1027500

Scaffold Ga0326762_1027500


Overview

Basic Information
Taxon OID3300033491 Open in IMG/M
Scaffold IDGa0326762_1027500 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.PS_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7265Long. (o)-110.7091Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043237Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0326762_10275001F043237N/AYIAQLSRHGYKYAVIGKLLRYDKELVKRLEYDGFVFYLCRLPSKKEVVSYCLPRTEGPFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINDCLNAIEKASEVKYPSPKLYLAHVNKLLRQLYSVLAHTYNDKERLSAIKRKVKHWVVEALKNQYGLKPKDAMLDYSRYVLKFSDVLRKKKSAS
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