NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316631_10194548

Scaffold Ga0316631_10194548


Overview

Basic Information
Taxon OID3300033493 Open in IMG/M
Scaffold IDGa0316631_10194548 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)776
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F017833Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0316631_101945482F000952AGGAGMATSDQEQKSVNVPQHKRMAMGAPITGQSLQEKGSNNKPQGGALAQVKKK
Ga0316631_101945483F017833AGAAGMATLGDLIGGIKARQADIAAALAAGHAANWESYQRIIGQYAGLQEALDILNELMKEPDSE

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