NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316616_101916632

Scaffold Ga0316616_101916632


Overview

Basic Information
Taxon OID3300033521 Open in IMG/M
Scaffold IDGa0316616_101916632 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)782
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011354Metagenome / Metatranscriptome292Y
F011387Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0316616_1019166322F011354N/AMGTRIIPGGCTHIEVSAETRMTEATFVFPTPQDYQDFGYLMARLASGIEVMIKVEDDDDD
Ga0316616_1019166323F011387N/ATGTTLTAVNDWMEVQAQSSSYTFAATVTGGANFQLALECSFNGNGNWFVIDTSKTINSNGQYVYFYDGKPAAKIRMRIESISSGTPSVVPHIAVAYHG

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