Basic Information | |
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Taxon OID | 3300033543 Open in IMG/M |
Scaffold ID | Ga0314765_1108747 Open in IMG/M |
Source Dataset Name | Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 869 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 42.3956 | Long. (o) | -85.372 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F015954 | Metagenome / Metatranscriptome | 250 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0314765_11087471 | F015954 | N/A | HLRRGGFLADYSGMQHAAKAVSWSTAWTDAFIRSRIGKKWGFLPSQLRLHPKSYVAFERSRSMWNRNFTCLPGPPTEDSTLLLSVRRPLDPDEQVALFLHQWATGREGGRKRDVFNPSVGFVRRTYSYRAVKPWSRLTFLGKLAALKVEPASKEEELRFLPADYVSLREDLVLKELAAFGSLVFNDE |
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