NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316213_1013567

Scaffold Ga0316213_1013567


Overview

Basic Information
Taxon OID3300033546 Open in IMG/M
Scaffold IDGa0316213_1013567 Open in IMG/M
Source Dataset NameSpruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)574
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9982Long. (o)10.7894Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066361Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0316213_10135672F066361AGGAMHRMVTHHEVGGGSHNRDEDFDERRAVETPPDLVETVRSLIVELQSCKDDNERLIKEKEKQTKINAVLLQS
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