Scaffold Ga0316212_1005876

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0316212_1005876

Scaffold Ga0316212_1005876

Overview

Basic Information
Taxon OID	3300033547 Open in IMG/M
Scaffold ID	Ga0316212_1005876 Open in IMG/M
Source Dataset Name	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1780
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9979	Long. (^o)	10.7895	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040189	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316212_10058763	F040189	AGGAGG	MPTLPYTPPSYGTTDVLYGTGILMTAPNPSLGVGATVPSDASLGVGSAWIGLGWSYVGATEAGVTQTFNPTVQNISIEEQPTPVGVAVNTADLTFTCNLSEETLQNINLAWGNGGSIATTAAGAGQPGKSVLTLSTTFATLSAVLIAKNAFGFATVLSIPTVVSAGQVQTAFRRAAQQRLYPLTLTAICPFNSITFTELTAPATS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.