Scaffold Ga0247829_10036749

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247829_10036749

Scaffold Ga0247829_10036749

Overview

Basic Information
Taxon OID	3300033550 Open in IMG/M
Scaffold ID	Ga0247829_10036749 Open in IMG/M
Source Dataset Name	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3329
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.673	Long. (^o)	-77.032	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034371	Metagenome / Metatranscriptome	175	Y
F078845	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247829_100367492	F034371	AGGA	MSSRDLRGRRHLQVIFGLFLASGVTVGAYFLWAVADWIRPQGEGAFGLFFVGAFSFLPAVLGWLAGGAYLFMVSKDRDVRLGVALTTAHLVWWLLVIGIAVWGHAPSGWAARPMTTVEPGLYAIGVTVLATRWFWWHRGGGRVPAHRLP
Ga0247829_100367495	F078845	GGAGG	LDAHIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAILGAVFRSRASPPDG

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