NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247829_10129023

Scaffold Ga0247829_10129023


Overview

Basic Information
Taxon OID3300033550 Open in IMG/M
Scaffold IDGa0247829_10129023 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1945
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075891Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0247829_101290232F075891N/AMMARRVRRLAVVVVVLLLIGVVALVLTTRPKLEDRRSDVDHTWTPLRGPLGERYARLGEANAQLAAAGGGERDVARALGLRLGRWGELHRAGEGDADADAEAQTADQLEGLAARLQAVVASSDRLRASDPLNQAIAAFQGTVPPPPAVTAYNRSVRDYEDERNGLLRSPVASLFGYDSRPQLVFAG
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