NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247829_10255046

Scaffold Ga0247829_10255046


Overview

Basic Information
Taxon OID3300033550 Open in IMG/M
Scaffold IDGa0247829_10255046 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1412
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041268Metagenome160Y
F092245Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0247829_102550461F092245GGAGMTLKRWMLGKGNEAAKRGSRLRTPTMGGDAAALNAREPGFSRFGRRVGTAEEPVHLGPYAALIGAIREELEQFVANQLRLHLAIAERDRYVLASIEVECEGGDGDRELLRRFVREFRPEQIKHYLAKEIIAALRNASSIDLSQFAGLNAERDDAGGGPDQERYSDLIAELSSGAPPSVARPYRVTLVGRWSDLAAPVP
Ga0247829_102550462F041268GGAGMMTLSRLNGSSSDAVPESVTGPFVWTFDDSFVDCLADIEDTLRRAIVQLGDVASIVVLIELSLPALRRRVDEGEAIQPAWARFFERLSTRYGLPAPPRVRPFKTAGPLATLVVAYRS
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