NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314858_006175

Scaffold Ga0314858_006175


Overview

Basic Information
Taxon OID3300033742 Open in IMG/M
Scaffold IDGa0314858_006175 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2229
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2943Long. (o)-156.7153Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008696Metagenome / Metatranscriptome329Y
F035746Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0314858_006175_1058_1462F035746AGGMKEHKHDFKKLVHVAFKYYKENNCCTVIVVAVAANIGFGKAYHAMKREGRQDRRGAYFAQYESALNKLGYRVEPSEVYMGKTLVSAKRICPKRGTFLIRSAGHVTCIRDGVMVDWAEDRNSRKRVKAVYEVIKN
Ga0314858_006175_1_192F008696AGGAGGMTNWHSETIERFKTLGSDVLLYIRQDAYHAAQAGETLDNPKVGQYWDEFHYAAQELRRRKVTVL
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