NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371489_0001138

Scaffold Ga0371489_0001138


Overview

Basic Information
Taxon OID3300033755 Open in IMG/M
Scaffold IDGa0371489_0001138 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42768
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (54.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: McLean, Ithaca, New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013069Metagenome / Metatranscriptome274Y
F020004Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0371489_0001138_17640_17894F013069AGGMTADQNHGPYSAQVEMRLIINNSSVSITQMGPDFLFIEGGLDHPPGEATIVLQVDQIERRWRVSLPDGISKDAKRVALALCGQA
Ga0371489_0001138_27319_27807F020004AGGMSKTMINQKHCPFCRRPAVAGCEHLALAAEGRDFVRRCVELCQGEKLWRALCESRHRQGLASGEWSPEREDYTWLETAFCEEFLKPLTWFGGMEYEWRSGANPAQSGFWVLLWSKDPRRLWWELWDEFERQGREKWSKGVAGAKPEARSLRAEGRRQTSLRL
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