NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314870_029871

Scaffold Ga0314870_029871


Overview

Basic Information
Taxon OID3300033760 Open in IMG/M
Scaffold IDGa0314870_029871 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SR_C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)514
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.5438Long. (o)-74.6258Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067864Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0314870_029871_220_510F067864N/AVVGLAGVCLLRDEIEKARHAAARALEDADGILFYVEEPADSIVVRGTTGTMEFVRTPTLCAEIMASSSDAFDRALAALQAAFPGERVAGKILSEGR
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Institute for Fundamental Biomedical Research
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