NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314862_0000088

Scaffold Ga0314862_0000088


Overview

Basic Information
Taxon OID3300033803 Open in IMG/M
Scaffold IDGa0314862_0000088 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7014
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048734Metagenome / Metatranscriptome147Y
F060559Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0314862_0000088_5016_5540F060559N/AMVVRVETIDDAGTGLRAALAIGPEVRTISLLFDPTRKEVAPWLESAKAASPETRGLMVQRFFARILSRAGYDVVIGRELDIFARGRLRSLFIEVKSSLAGGRFGSKAAVSQLDGYLLACQRNGAERWLGTMGMIKPMDLYDTFRAALRARNIGLIDIRWVSTKETLLPHLPSVP
Ga0314862_0000088_5529_5807F048734GAGGVTLPRSDSATDSLTEAEARRLASALRTRAEKIRKGIAPRDASSYVQQIDSGWFPPEVEGEGGGTLKADFDDPDSIDETAEFFGSSGGVTLRY
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