NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314863_014420

Scaffold Ga0314863_014420


Overview

Basic Information
Taxon OID3300033804 Open in IMG/M
Scaffold IDGa0314863_014420 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1584
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048734Metagenome / Metatranscriptome147Y
F060559Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0314863_014420_1204_1533F048734AGGLSYLYWSWIRHVATQEGVTLPQSKTAIESLSDGEAKKLASALRARAEKIRKGLAPRDATSYVQQIDKEWFPPTAEGDDAVVVAADFDDPDGMDQIASFFESSGGVVLRY
Ga0314863_014420_655_1215F060559GAGLVAYLLNPLNLLEGVIRADTLDEAGAGLRTWLTKPEVRTIRMLLDPSMTEVAPWLEVVRAAAPEVRGLMVQRFFARMLNKAGYEVVIGRELDIFARGRLRSLFVEVKSSLAGGRFGSRAQITQLDGYVIACERRGAERWLGTMGINRPMGLHNGFRAEMRARNIGLIDVRWVSPRETLLPHLQSIP
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