NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314864_0001501

Scaffold Ga0314864_0001501


Overview

Basic Information
Taxon OID3300033805 Open in IMG/M
Scaffold IDGa0314864_0001501 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4430
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000372Metagenome / Metatranscriptome1220Y
F000985Metagenome / Metatranscriptome813Y

Sequences

Protein IDFamilyRBSSequence
Ga0314864_0001501_1274_1528F000985AGGMKNVYEVLRQKELELTRLEKEVEALRVAAPLLSEEKEPIAEAPKPTLAAPAPQQPIRIPAPVAAQAANPPGRVAGWEEAAKRWP
Ga0314864_0001501_2537_2932F000372AGGGGGVSRSDSGVSRRWTVIAAGLLILALALVVLYTRKSAFLSPVAMVVVAAIGLAALLLQVRFRGNLPNIKSPIGLNVLGLFCAAVALLADYLHITHATLELVAFAAIVCFGISGSLILHALRRPARPSESIKQE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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