NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314864_0001836

Scaffold Ga0314864_0001836


Overview

Basic Information
Taxon OID3300033805 Open in IMG/M
Scaffold IDGa0314864_0001836 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3938
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004841Metagenome / Metatranscriptome421Y
F061236Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0314864_0001836_1634_2092F004841N/AVGQKDKKTKRSDRAPRIRVPNQERALFQVSEARFVGVIQRLSLTGGSAVLARGPIPQGTMGDMVLNTVFGKVTAHIEFLHTGADGIPLAQAFRFLAMDDASTHRFEAAARQMQEEGFSDVPVTSRSGDASGALGGLLQSVRRLAATLAAGKS
Ga0314864_0001836_3141_3356F061236AGGAGGMADAEEKREAGASLMFAGLAVWVAGLLVLFYLPAATRIGYQGRFGLILGGLAILGAILMARGWSMRRGTSE
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