Scaffold Ga0314864_0011180

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314864_0011180

Scaffold Ga0314864_0011180

Overview

Basic Information
Taxon OID	3300033805 Open in IMG/M
Scaffold ID	Ga0314864_0011180 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1747
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-6.3272	Long. (^o)	-74.8136	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314864_0011180_1235_1498	F005268	GGAG	VTQSGDQKEQAQVFRTLSEAGLVEIGVEEFPERLADVKRLVMTHLRELLDLDRTDKERESAAYSLGTLKGLELKLKGKAAPETNPSD
Ga0314864_0011180_804_1238	F003832	N/A	MHPAVNQIRTETNWPPAAGQLVDFRSAAGVESAILGKVRWGLVWRDYILEDGRVIPEHRISGCPQPQPWRPLSDVSDEERESWEERLLSMAGAGMDPRMRDQSFWAELNQYLAYTYLRYKHAGRPGGQQGSIPNSPTTNIGVER

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