Basic Information | |
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Taxon OID | 3300033805 Open in IMG/M |
Scaffold ID | Ga0314864_0014976 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1556 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Peru: Loreto | |||||||
Coordinates | Lat. (o) | -6.3272 | Long. (o) | -74.8136 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F034284 | Metagenome / Metatranscriptome | 175 | Y |
F046658 | Metagenome / Metatranscriptome | 151 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0314864_0014976_700_867 | F034284 | AGCAGG | MQEQSSDFQARAAELLFAAVVNQAILDVLERGEEAEEAKRWLMSKDFDVLQSLFH |
Ga0314864_0014976_869_1294 | F046658 | N/A | MRCDLIIASHLEFPVFGSRRAVPLTGAVELVKTSRPLATIFGHSLCSKRTAKIGCGLVAAVFLLQFYCVRELLLMEVVVALGFVVVALIGAVYALGCIAVLWLRKLGSGLKALGAHVSVRHRQPFSKTTTIGLAEAKEQAS |
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