NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314864_0110197

Scaffold Ga0314864_0110197


Overview

Basic Information
Taxon OID3300033805 Open in IMG/M
Scaffold IDGa0314864_0110197 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006399Metagenome / Metatranscriptome374Y
F017965Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0314864_0110197_2_424F006399GGAMATASLNSRVQSLVIEYGVFWQSWPEFEQAHGERRLIGYEVELIGSHGSDLNHLDPACSTCRHVRSVLLAIAETIPEDVNTRRTSLMYNVDSHSNSILCLPALGNRSAVSVSIYVSWNGSPGAAFETELLNEIKTFLSKWG
Ga0314864_0110197_491_676F017965N/ARDALYLFACHFEWRSTRNLAAYQELLAALDDPDSGIRHLAESLLHRSSPRPERALKGVES
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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