NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314865_000643

Scaffold Ga0314865_000643


Overview

Basic Information
Taxon OID3300033806 Open in IMG/M
Scaffold IDGa0314865_000643 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9261
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050960Metagenome / Metatranscriptome144Y
F082858Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0314865_000643_3225_4205F082858AGGTGGMPAIEILAAEPVEHSETLATPLAKERKTKVRRFRPLTLKDHARLLLPLLVIGVLGCVARLKYPYWWPFPEFVSFVADSFIVAAMLGVFLELFSAKLLVERVSDALAQRLIGRGLPAELQAPIRDIVGTDLVRDHFVKSYAFSIPEDGHVDVDVEVRYELRNYSEAARDYAPEIAAEIFLQPEFRFLEYGIAGRKLHTFSDDNLSSKVETVEEFNVVRVPRSALPPVSLKPVRTGEKAVCQVTWRYRVAMPEEFCDVTDLGEATLGATLQVQNFPRDLEFVVGADASLHHEADSQSWYYDKSFVAGQHLRACWFRKASVRPSRRMGR
Ga0314865_000643_6368_6907F050960AGGGGGLLAGSGTKGGSDAASAKGDANPEPNGTRDGKDLSSPSASQVGDNRVHPVFQDVELRVIGLALALPHSSYFSNYEVYVAEKWVNKEESQLIKLVYVFLPYQRRLAEFGVDKLKVRKLRVTRDPTCDESLMQMVWPDGENGLAPTSNSGDVLASNPAERNSVLPCYRTTADDYRRAVSRNR
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Institute for Fundamental Biomedical Research
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