NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314866_003811

Scaffold Ga0314866_003811


Overview

Basic Information
Taxon OID3300033807 Open in IMG/M
Scaffold IDGa0314866_003811 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1709
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075242Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0314866_003811_1013_1708F075242N/AVLFVVAVAQWAWAADIAGIVTPLLAARERTAFGTVDGRAYAEAQRGGTESTTPYPSVSVLLLPRSAEFDAELDGIKARYRDSPDAFLQAEPKLSAARQGFERALIDAGGGHLLLGESSDSAGAFRFANVPEGSWTLLAWRETPHDKRPAVLKPREAARYKDRPQVFGYTTVVFWRVPVQVKAGEEVAVRLHDRNEWLTGTREDRRIIDPNQPAPKGQPASKGQPASAPTSR

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