NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314867_008941

Scaffold Ga0314867_008941


Overview

Basic Information
Taxon OID3300033808 Open in IMG/M
Scaffold IDGa0314867_008941 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2352
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F059669Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0314867_008941_1375_1692F059669GGAGGVNPYSTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLGEEAVSVPAPAENRGRRASDNFLGERIVPPRASRGRT
Ga0314867_008941_196_696F000188N/AVAGNEFLERWRASRNDRITNLFGVEEEQTQAEETMSVKPELAFDVCWEVYRGAREVLEAKRGITALTCEVDAKYEWRPDLRPKLKDWVADFALAGQAALAGPERASRMVLFRLYYLGLTPYDRARHFLGLSERSWVNWSEEIRHRCGQELLRRSLFPPRKYFGGRD
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