NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314867_041131

Scaffold Ga0314867_041131


Overview

Basic Information
Taxon OID3300033808 Open in IMG/M
Scaffold IDGa0314867_041131 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1086
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045285Metagenome / Metatranscriptome153Y
F052095Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0314867_041131_3_473F052095N/AMKTALYGRIVFGGSAVLFGVIALMWHDPETWQNLRHIWSLPFGVFIGGCLMTAQIAGGVAMQYPRTVRLAAVVLGVVYLVFALANIPDIIAASNVYERYGGSFFQFFCMLCGAIALYAATEADAGRATAFGRVARVGLGLCAISFTLGQALLLQDTA
Ga0314867_041131_721_1065F045285GGAGVINKISVCTALLVCLTAPALCQSKDTRIGDDYAKAALRAVIYTNETDISAERVSFLIDEADVEASTPAEEANLKELNRILRVWLSRRINDNQVCYQAFKSNLKARSSAIPEACK
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