NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364928_0071639

Scaffold Ga0364928_0071639


Overview

Basic Information
Taxon OID3300033813 Open in IMG/M
Scaffold IDGa0364928_0071639 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 30_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054696Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0364928_0071639_305_745F054696N/AMESEAWQAQLKRKLHAIHCERRYEAPEWKHERRQLRVMTSMHLDILPGRQGWKVGRSRWTIENGTFNRLTRDYALEHNYRHSVPAIVGLLAMRSFACLLTQAYWRAAIARSKNAPERFVKWFQDIIVEDWVRYLDQALTEPGCRSG

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