NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0000077

Scaffold Ga0334980_0000077


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0000077 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46587
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (54.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008878Metagenome / Metatranscriptome326Y
F010762Metagenome299Y
F010994Metagenome296Y
F022116Metagenome / Metatranscriptome216Y
F065564Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0000077_1358_1510F010762AGGAMNQTTLEIAFKEWWEASYGRHPGTHAVMTHVAFAAHILELLELMQDERSN
Ga0334980_0000077_28087_28392F010994N/AMDLPSLRHFQNAGIYFISSDPVEALHGEAWVPAIYTDKGWATADGSKLLTGIEEWRNAAEERQITGCDLKQHQSRDEGGQTAKASNRNRAVKSRQVTQAEG
Ga0334980_0000077_34476_34745F065564GGAMPEIKINVTGDDLARLNAEAAAHGIPRAHLIRQRALSGGVVAGLTTAAYHALVADACAFMRGDLNRRHVETLVAYVIAHSHSSQAAAGD
Ga0334980_0000077_5215_5400F008878N/AMDRFADYIALVVAIHGVALIVVNLTPTPKDDAALTAASKAVVKIYRAIEILAGVITPFVK
Ga0334980_0000077_797_1006F022116AGGAMTEPFLTTDELAARWGLKPAAIKNQRARGIGPAYITAPRIGLPAGTPRVRYLLAQVLAFEEANGITPLN
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