NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0000113

Scaffold Ga0334980_0000113


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0000113 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39140
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (41.51%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Associated Families12

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002621Metagenome / Metatranscriptome542Y
F004206Metagenome / Metatranscriptome448Y
F007030Metagenome / Metatranscriptome359Y
F010533Metagenome / Metatranscriptome302Y
F010991Metagenome / Metatranscriptome296Y
F012771Metagenome / Metatranscriptome277Y
F022396Metagenome / Metatranscriptome214Y
F034152Metagenome / Metatranscriptome175Y
F045703Metagenome152N
F053148Metagenome / Metatranscriptome141N
F057925Metagenome135N
F078616Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0000113_13177_13581F004206GAGLIPQITDYLLAKVPDSFKGWTREAVEDYVMFHAEQGTLKIACQDDHVVAVLVGWRQTGPEPKAWSWQPNDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPEAAILPAIGYRNGKLTTYKKGSMPIYRMASKMI
Ga0334980_0000113_25128_25301F057925N/AVTYRNRTNPSVVVEILAQDAQLRLGELRWPVVIYRRLDNGTVYVRSKAEFDAKFAPE
Ga0334980_0000113_27599_27826F078616GGAGGVISKKTITSAVAAGWISFPEPKARELSRNWAQPFEAFDSELAYRMWDNGADTDTVARAIGCKRRFVAQIIKHHRR
Ga0334980_0000113_27823_27981F012771N/AMNLKPKRPTPKTFVVSDDTHKRLKDYAKMKGYKLQYIADEAVSEYLKRKEQP
Ga0334980_0000113_29401_29622F045703GGAGMNIPPALSVAFVYKHTMTSEVLVVDIDRARELDAARPYWQHVSTVNPISILQLIVQSKGRERTKIIKELSEIP
Ga0334980_0000113_35782_36108F053148N/AMTVTNTTKLLSEAPYLVKIGVQRGWLSYPKGMAFKEDGTPDPVMQDEPEVIEQRHTPDLARKAYDLRDRGLSLNDVATACQVPRGSVVYLITKGHELYLASQRKDIEP
Ga0334980_0000113_36105_36923F007030AGGAMTANKAESPQMEDPFIYAPQPTSKVQAVTQAGTRPSIHVSLYAYGGISAACMMSWVDLTATFARSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWVQLDHDIEFAAADVVRMAELAHEHQATVCIPYSCRSLPARPALRPKVEHLQALKHQVNDAECASELVPITMFASGCLAIPRKCLLATLEALEGSGVQNPYKIDWCEDVRVERFPTLWMPLAMESMPGKLEYLSEDYAAAVRMTLAGVKHYSMKPKKQLNHWGEFPFSFAPYAG
Ga0334980_0000113_36913_37530F010991N/AMPGKKTRASLNDVAAKAGTDRNRVTWALRDDPKLPKEFKDKIKKAAEEVGYVKPPTNQHPNSKLDQDKADKIVEGIVANKSLATIASETGLSEHTAFKYIRGVKVPVDYPENEEDWRKDVTGFLEVAIWKGTRRLAQESMAFIDDRSLPVSVAVLTDKLATIKGQPTSIHLAMTASVSHRDLMKDLKERDVTPVNDEQIPDGANL
Ga0334980_0000113_5315_5569F022396AGAAGMNVGSNRQLAGEYGGRYIDASAGTVTGNWMEIHAVATSILGAVSSNITNFPSGVTIQAGDSISGVFTSVAVSSGAIIAYNRKWV
Ga0334980_0000113_5571_5810F034152N/AMRLGLGLGLGVQQALGGASGGADLPIIRRDLLQEDDFFVLLEDGIDKIVITFGTFDSLLLEDASFLLREDDGKLIIQAN
Ga0334980_0000113_8067_8288F002621N/AMEKLPRLSKTIWLIALLDCLGCQMTKVVLVPSGDPVMLAKPTKASVYGFDKDKKLVGPSTVVLPAGWYVLPKQ
Ga0334980_0000113_8285_9214F010533N/AMRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYQQEFFAPTYSYSATYNAGDVVYYPVEEKYYQWVNITPTSGQTPTINGPKGSLNSIYWAEAQPSYGNNDGNWDFSTAYTVGQVVLYPVTQEHYQAYAVPPAGTIPTNTAYWGVLNKFLRNISQTNNPDGTTRAVPIGETFSVWPGDPRVSWRQQEATYTFTDDGVLVGDQLPYVWLEFRKTPPLLSSSAEASAYAFPYRFSEICALKAAGQMLRVDGKIDLGNQFLELGEVELTKEIDKVALQEKYVRQIIVPSR
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