NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0000145

Scaffold Ga0334980_0000145


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0000145 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34648
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (33.96%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012760Metagenome / Metatranscriptome277Y
F021985Metagenome / Metatranscriptome216Y
F040538Metagenome161Y
F057305Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0000145_16456_16692F040538AGGAMEITNVDRPTKIQRVFDYMRRGTPLSACEARKRFRVGNMRATMHDLREAFDRFDMNYTVVRELRNGRTYYRVARNRSR
Ga0334980_0000145_18043_18408F012760AGGAGMKIPELVYEIRNLARKEEDPVKKDLFYQCAKSMEILGNIAKISDLAVAEHRSAEKPSIETDTEIKWNVDDVTLKMLEEHIDSLVHYNFMEKDDRWPYGNEKFTKFIPQYLKSQRVNDSNI
Ga0334980_0000145_18418_18627F057305N/AMKNKKKIINKKRKPTENYSYYFAAHVDSTGEVTPLLLTDREFVSAKKRANKNQEDVPIDFIVFNQAHKK
Ga0334980_0000145_20499_20681F021985N/AVETPSSKKDHLYAILFRESKLIISNYENYLRDRLSSKELAEKMLSLRDAIKKIEEFNKNN
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