NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0000257

Scaffold Ga0334980_0000257


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0000257 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25194
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (75.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001507Metagenome / Metatranscriptome681Y
F003393Metagenome / Metatranscriptome489Y
F011386Metagenome / Metatranscriptome291Y
F023275Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0000257_13377_13616F003393GAGGMITLEKDDTIPIMDYYKVDVLTADQLMVDDLILIDEEIVSVIDIVSLPDGYTLEVENDFGEREIIQVGEYDQFDLMMLQ
Ga0334980_0000257_18035_18208F011386GGAMKVTLTSMQGNTRNINLMTKQEVYEFIELYKSTLQKNQRVKITCDLLGIDGYLQGQA
Ga0334980_0000257_18993_19145F023275N/AMAILDNFESSLPDDYGTPRKIINDAIKEMLEDPEHHKLMERLKYMEDHGI
Ga0334980_0000257_7963_8124F001507N/AMTTTHKPYTISELVEAIYEDNYSHFDFMENMGGDQCDCHLCMTMLNIIRYWGE
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