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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033816 Open in IMG/M |
| Scaffold ID | Ga0334980_0000289 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23663 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (26.92%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014513 | Metagenome | 262 | Y |
| F015061 | Metagenome / Metatranscriptome | 257 | Y |
| F054624 | Metagenome | 139 | Y |
| F056542 | Metagenome / Metatranscriptome | 137 | Y |
| F061533 | Metagenome | 131 | N |
| F075040 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334980_0000289_21153_22115 | F014513 | N/A | MADTLEEMVELVKGFVGDSGTCSDDRAIKAINQARRLLWNKRGWTSIEEYVQICCVNDCFTLPNRYEQIKLAWIGNESASLADEWFNATNAFALHADHSCHRLITEIGGLHVLFRDYTTHPYQLGIIAEDVEDAGTELMFEVQDQYDTYHKVNLFAAQSPNISKTDLLIKGVRAVSKPVTKGRIRVYAYDMELQARTLIAIYQPNDVNPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAILALNSRENRKAQEFMSNLGLAVQEQEKEMEGYEIPTAAPLRIANYSRADNLIGSDLLSPSPNDYFLYR |
| Ga0334980_0000289_22137_22301 | F056542 | N/A | MTPLKGTDPKLVSDGSPTRGSIREGMGNMNPPNSGKNPYSSAPMPKSGKPVGGK |
| Ga0334980_0000289_22804_23535 | F054624 | N/A | MIALDLDQSASPAPDAQLTFRWNGLWTGIRPTQMLSALIAGQKRGFAFSFDKDNKNRLYEITSEQTDDYGPNGTRKIESFFTTGRYDFNRSGATNKFLRKRITGGEMWMSEIKGEVESSVEFRADSNPCWSELKVPTTFGCNPCSPVVTECVPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKINLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFSCCQEKYWEYNIVN |
| Ga0334980_0000289_5684_5965 | F015061 | N/A | MSEPTPQNETSKAVLEAFTFIKSADETLNERVHAMSSLLHTAAMMVIKSESRKGEGFEAIRYLEMAFLYYTQAQFRKRFDKEEEKEEAPRIIT |
| Ga0334980_0000289_7601_8410 | F061533 | N/A | MSNQLEGIEQKDIIKRVTGKVTKLWEAKTFNGPKGEFVIQGGEIEIDGQTYGLKFFNNTQEQSIKGNVITLSSVRGKHGLTGVSLEHESYDGKNGKVDRDIIKVTATGKIEFDRPNEEPTRVTSTPKSIVTDNPEKALDEIVEMHQYIDSLVRMAYLGKIADEETLRSYVSSVFIEANRKGIHLSSKVEEPKKEEPVKEELDPEDWGSAIVPSGSHKGKKLAEIGKPALTKLYQYYLEKGFNTPFAKCVEKAAEDLNLDSPEESDDIPY |
| Ga0334980_0000289_9694_9933 | F075040 | AGG | VGGTTSVHKNQMKDTPKVKSTEAEIVPSQLTRDIYLRLISAAASDGKFEFGKLPNAQAVVKQGDHLKGVAEILATCYEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |