NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0000574

Scaffold Ga0334980_0000574


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0000574 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17207
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (17.95%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F003038Metagenome / Metatranscriptome511Y
F019119Metagenome / Metatranscriptome231N
F032245Metagenome / Metatranscriptome180Y
F037129Metagenome / Metatranscriptome168Y
F044374Metagenome / Metatranscriptome154Y
F047578Metagenome / Metatranscriptome149Y
F048842Metagenome / Metatranscriptome147Y
F049561Metagenome / Metatranscriptome146N
F065559Metagenome / Metatranscriptome127Y
F077051Metagenome / Metatranscriptome117Y
F078606Metagenome / Metatranscriptome116Y
F082372Metagenome / Metatranscriptome113Y
F096905Metagenome / Metatranscriptome104N
F098924Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0000574_11154_11741F032245N/AMQEVFNKLIKAGISPNAFYVLYCIHNKIVPDKTVNTSLEVAKLLSGNYLTESLELSGNSLKFIEEIDGFFKKSKKKTSKNLMGEDFQDNLKLYNQLFPSGKLPSGVYARVNIKSLENAFRWFFENFSYSWETVIKATERYVDEYSLDRYNYMRNSQYFVRKQNTDKTWDSTLATYCDMIDADDYEEPNYFKENVV
Ga0334980_0000574_11738_11908F078606GAGMIRFKLFFIALVGSLVSWLLVHTLLVEMNFLQFLAIEFVVGLSHLIYNDVKSRLTT
Ga0334980_0000574_12916_13551F044374N/AMSRKEKERESLNYHMDRFRRAQVSDPFFVLKTAFFQKGRYGRQVQLFESELKRGEDIFIEFIDIIRDESGREQRIEPAYADRPVFRYKSNPYFAEEYDVKEGTNANGDNYLAYTIPLSELMVIMPDGSEITYNLYEKRKAEAPKEQISLSVFPNFEDEFIPKLKDKTEELSLDLPSEDEGMAEITIRDFAAIMWKQPVSKKNWLNDLIKQQ
Ga0334980_0000574_14290_14973F003038N/AMALSTTDLGTAGSGLPKTITPGNHVLKINSIELEEFKFIPGAYHLMMHVETQPIEGFEGFMIDKDDESKGRHAGQIGRVKASQYAFADGETKSGVKIQRDRSILIFLRTLAHTLELDSWFVEQDGQHETIEDFVKAFNKTADFRGKYLEFCVAGKEYESKSGYTNYDMWLPKAEGKKYAFGAVEDGAVILYDETKHLKKLEVKDVKSFGDDDDVFTSPKTSSDFNLD
Ga0334980_0000574_16431_16886F065559AGAAGMPIFLAGFIKSNSMNEINMMATLVKLADLGVTGIKVQYEGSGDSGAIENVVYTTEKMVEDEEDAFDDINGIYVWNQDVLHLQDLDSGLSSDIANFVEEKLLNDIEDWWNNDGGSGAVCILVPSGKYKIINDIRITEIETYYHEGSLIQKTL
Ga0334980_0000574_2015_2497F000716N/AMEKLKKQVRNYQLYAGRTYVQYEQDGYTAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQVTIKYSNAIFNTLFPNSPITQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFFDLKEMPNQLPRLKNEVKA
Ga0334980_0000574_360_578F096905N/AVESKIFTSVIGFNFELNLVNNDGEPIKTGARRIECLSSDVPNVGTKIGGERWFTNFNEPLLSKIRDYRRRND
Ga0334980_0000574_4231_4509F047578AGTAGMKAICIDSSNKPAKVPIEQWVKEGEVYTIIKVVKMGLQDGKYGVLLKEVQISADCFPYEYYDAERFIPLDIRLYQIEEEKEEVLEEADLELI
Ga0334980_0000574_50_370F098924N/AMNVLGKLFNKKKTYPKDNKFEVLIIGEDKSDFQEMLGITDRRKEELVRLAFKSYRDNDLFTTSCQVTVAECTHINEVVFVMTVLTKIREVESNPLSAILSGIGRGE
Ga0334980_0000574_5422_5616F048842N/AMRNRNWVVILPILFYVLAGFGYLRCVYKMCTCNWEPVGKAEIVYTVGTFTGAGVVIGYLNIEDK
Ga0334980_0000574_571_999F049561AGGAGGMTKIKLELEETDMFNAIKKILDHPNRVEIAKALTSILAPNERLSSIFFKTYFGSSAPQILPEGTMITVSPRDLSYKANIDGMKKLGLLNISGHATAIVKEFKGFHDYTTYIVNFMNVDENNKTFEDTGFIAYNQVESIIEDL
Ga0334980_0000574_5858_6028F082372N/AMSEEQETGWISALIKCDLCGHESLSVHHESCDKLECVNCGRMSHYEVLEYYTNEEL
Ga0334980_0000574_6676_6855F037129N/AMNVNKKDYKVVEVQDGYTTKYAVKKRIFWLFWKTIKNSAGFDMQYDTKRAAQSYINFLK
Ga0334980_0000574_7770_8189F019119N/AMEKKITHEMLELSAQIAKEHYELTESVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDDEIKNMIRMLESSDEENLHMVTLSIKSFRNLRILEHGEYSKVSQVYWKIAKDYPHEILNHEVFMQTMSPANN
Ga0334980_0000574_8193_8447F077051N/AMTEQQLIDLGFNRVEINDSESQNGYDYFFYTLDIFNNLTLMSVDSDQVKEENWYVYNLDWPDQFKLQTKDQVLQFLHSVGHSFS
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