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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033816 Open in IMG/M |
| Scaffold ID | Ga0334980_0001206 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12052 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (35.29%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003904 | Metagenome / Metatranscriptome | 462 | Y |
| F028094 | Metagenome / Metatranscriptome | 192 | N |
| F080979 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334980_0001206_118_735 | F003904 | AGCAG | MNNIILNIKKYLLVVLLPTAIFVIFALSSLKDIENAFVRFRFGRDITLYLRRSTDNLTYLGAAYTATGDKKFLEQFNAHLKERQNYFNNEVFISKILTQEELKEFRVGLDISNELAKEVEGPAFEKMDSKAFFGEKYLDYKKRIYDSKDKFRTLINDSSEKIIKDETKLLNIYLYGLCLIIISLVFLIKNDNQPIKKKTIKKKKK |
| Ga0334980_0001206_4245_4448 | F080979 | AGG | MQDDKPINMTKISQKEEKNYKLLKEGQDFQVGDLIHLVDDEYVKLNKDNQLLKTKVTKYNKALRKAK |
| Ga0334980_0001206_4648_5304 | F028094 | AGGAG | MRQQLEFDFRSPEEISRQRKIAEENEKAFDSIFSDDGYVYNKYVDFLLDLIPFRLAWKARYWPGNIRWWIKCKYQKIRYGVSDDDVYSLGYNIALFALPRLKYFKKKGKTGIPCCFLPDDFHLLEGEEQTAAEEKGVKQMESALDEMIFAFEYIIDGDKMCELPESVSFKGNDFDFNSEKSIEEKEDWKRYMEKANKLNERKENGLMLFAKYYDTLWI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |