NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0001624

Scaffold Ga0334980_0001624


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0001624 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10366
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006885Metagenome / Metatranscriptome362Y
F010599Metagenome / Metatranscriptome301Y
F018928Metagenome / Metatranscriptome232Y
F070870Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0001624_5607_5966F010599GAGMEIIFILFFATLSFSFCIAYWSTLNRLKKSNILMAELFIKNAALEELTSRIKNDSGISDDLIHKENFIKFLSDSRDWAFQYIEESQKTIKEVSEELKSKGLYNYSNKLLSLLPPKLEEK
Ga0334980_0001624_6466_6612F070870N/AMWSNDSNMKKKTKVLVLIVLSFLTAISLWAASNFKKMSDLDIFNIEED
Ga0334980_0001624_8194_8403F018928AGGAGMIIKSLNTMEKIVSKNKNLVWQGWDVIDLKESDVARTSPLGIRIKDKWYLHRVYKPGRNGWDIPNKYKD
Ga0334980_0001624_8728_9156F006885GAGMKYLLIIGLTLFASWSIINISNKKRMMFLGKDRYKQSYIYEIIKDVVPKQIFDKPKVITQSQKHIQKNMLKVVITEGKAYWILGNVFYTANAINGRVDEETTMPLDVQDMPAKELNKMLSILDDLKQGVEPNDSGSTGNKRF
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