NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0002059

Scaffold Ga0334980_0002059


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0002059 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9238
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (29.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004314Metagenome / Metatranscriptome444Y
F023571Metagenome / Metatranscriptome209Y
F029416Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0002059_1141_1392F023571N/AMNFSALTFSDHAIKGATKARHTFENGWTISVVAGPQDSGLYGEIQHDTFEVAVIRPNGNMLDDVICWQTPVQITTLMHLIEML
Ga0334980_0002059_5859_6026F029416GGAMPDTLSRNIYRALFSEDQWDLIYAMVGHALDDDDFDPEDVYSIRNKIHALFDYND
Ga0334980_0002059_7929_8066F004314N/AMYDDYDLDYTYTNDHADLDEYTSDLDEDYARDSHDYESLAYRHYA
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