NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0003313

Scaffold Ga0334980_0003313


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0003313 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7282
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F048248Metagenome / Metatranscriptome148Y
F053077Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0003313_1342_1830F000716N/AMKMEKLKQNVTDYQLSAGKTYMQYEQDQYSQYQNYLYKRVLYGIDVLTEKELATMCSKKKQRIINVYKRAQVVLNKFKQELTIKYTNLLFKTLFPKSPITDILLSETETDEKFKNTLTFKDLNISKDDIITIFIAEGILPKNFLSLKEAPISLPMLKNASKT
Ga0334980_0003313_2415_2681F053077N/AMYYQLPNGKVIYLTIEQYLELTEEDIQYLMSLDSGDHITNPFADSAVIENTKEKYYDFDYLPADESDDNYCDDTPFDDIIDLSDNLDI
Ga0334980_0003313_2838_3257F048248N/AMRISVNYDDTDVAKALSKIIKDSNSEEFIKLLTPMICTSQHASEYFFKLMLGNKLPDIIPNGTLCKVPVNQLGYSSHKEAIREKFADDDDKVVVTVKEFRGFHEYSQYHIEYTDVLDNGTTKKDSTYVQAKDLEVVEEF
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