NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0007457

Scaffold Ga0334980_0007457


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0007457 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4828
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028146Metagenome192N
F051072Metagenome144Y
F081254Metagenome114N
F085379Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0007457_1967_2263F028146N/AMETTHEIKKAAVIAAAAEQVRSLLETHYDAMRKAAEESFVDDETQAEPKAKASFTIEWDALAMAPTVTVKVGWSVRFKDESEAVVDPLQAKLDIGGAQ
Ga0334980_0007457_2989_3399F081254AGGAMTDQHAEQIIAELRAIRALLSTKPAAPAAASAPAPAGAPKDIPQPSELVSDPGSVEVHFGKNKGTPLRSLGAKSVEWYAQEPEPRIGNNGKPFPPRAEDVRLRNAARQLVHGNRGPLAAGSKVTLVTETLTEEVPF
Ga0334980_0007457_3396_3626F051072GGAGGMQNNFNRTQPIKNVTGGGHSAARYTGTHGHVERSAHYCFIPGEGWVSWREIYDQFDAAFRDWQMRQALGLRKIKTQ
Ga0334980_0007457_654_854F085379GGAGGMSARANPKSEVIDEMVARFAPFKEILAVVRMQQAAVRQRIYNRGYRREYITHEERAHLLRRRGVKL
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